Plant MITE

SE3020052

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_189
Malus domestica
SE3020052
Mutator
MadM27
MDC004486.337:13832-14045
AAATAAAAA
GGAATTGGATCCTTTCCTGAGTAGGAGATCAGGATCCCCCTGACCTATTAATATGGACCGTTAGATTTTGATCTAACGGTTACAA

Secondary structure and sequence

TSD TIR

5'

3'

AAATAAAAA                    GTA              C                   C    A         C            -ACAAAA    CATT
         GGAATTGGATCCTTTCCTGA   GGAGATCAGGATCC CCTGACCTATTAATATGGA CGTT GATTTTGAT TAACGGTTACAA       GGCT    
         ||||||||||||||||||||   |||||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||       ||||     
         CCTTAACCTAGGAGAGGACT   CCTCTAGTCCTAGG GGACTGGGTAATTATATCT GCAA TTAAAACTA ATTGCCGATGTT       TTGA    
AAAAATAAA                    ---              A                   A    C         A            AATAATA    AAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020052

AAATAAAAAGGAATTGGATCCTTTCCTGAGTAGGAGATCAGGATCCCCCTGACCTATTAATATGGACCGTTAGATTTTGATCTAACGGTTACAAACAAAAGGCTCATTTAAAAGTTATAATAATTGTAGCCGTTAAATCAAAATTCAACGATCTATATTAATGGGTCAGGAGGATCCTGATCTCCTCAGGAGAGGATCCAATTCCAAATAAAAA

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