SE3020056

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_193
  • Malus domestica
  • SE3020056
  • Mutator
  • MadM11
  • MDC015444.153:3215-3378
  • ATGTTATAG
  • GGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACCTCTTGTTAATTTATGTTCGTTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTTATA        C                                 T   G       A  T     -    TTCTTTA
        GGGGTGTG TATCCACACACCCCTTTTTACTTCTCACACACC CTT TTAATTT TG TCGTT GATC       
        |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| || ||||| ||||       T
        CCCCACAC ATAGGTGTGTGGGGAAAAATGAAGAGTGTGTGG GAA GATTAAA GC GGCAG CTAG       
ATATTGTA        T                                 -   -       A  C     T    CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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