SE3020059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_196
  • Malus domestica
  • SE3020059
  • Mutator
  • MadM12
  • MDC006447.348:6031-6261
  • ATTGGGGCT
  • GGCTGAACCAGGATTCTCTCATGAGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTGG    -----                        ---   CTAGGGATCCTAGGGATCCCGCAATCATGTCCGTTCATCGTGTATCGTGCGGTRAGAAATCATTTAAAWTTTAAATTT
     GGCT     GAACCAGGATTCTCTCATGAGCAT   TCC                                                                              
     ||||     ||||||||||||||||||||||||   |||                                                                               
     TCGG     CTTGGTCTTAAGAGAGTACTCGTA   GGA                                                                              
         GGTTA                        AAG   TCCCTAGGGCGTTAGAACAGGCAAGTAAAATATAYCACGCCAGTCAAAAGCAATRCATGATAAGTATAAACTTAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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