Plant MITE

SE3020066

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_203
Malus domestica
SE3020066
Mutator
MadM4
MDC001320.552:11820-12008
ATTTTTATG
GAGTAATGCTAGAGAGACTAAATTTATATACTAAATTTGGAAATTAAATGATGTGT

Secondary structure and sequence

TSD TIR

5'

3'

ATTTTTATG            A  GAC       A  T         - GA         AT    CACCAATA    ----    GCACA       ATGT
         GAGTAATGCTAG GA   TAAATTT TA ACTAAATTT G  AATTAAATG  GTGT        GGAA    ATGA     GTTATTA    
         |||||||||||| ||   ||||||| || ||||||||| |  |||||||||  ||||        ||||    ||||     |||||||    T
         CTCATTACGATC CT   ATTTAAA AT TGATTTAAA C  TTGATTTAC  CATA        CCTT    TACT     TAATAAT    
GTATTTTTA            C  RTA       C  C         A AT         --    --------    CAAC    -AARC       GAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020066

ATTTTTATGGAGTAATGCTAGAGAGACTAAATTTATATACTAAATTTGGAAATTAAATGATGTGTCACCAATAGGAAATGAGCACAGTTATTAATGTTTAAGTAATAATCRAATCATCAACTTCCATACCATTTAGTTTACAAAATTTAGTCTACAAATTTAATRTCCCTAGCATTACTCATTTTTATG

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