Plant MITE

SE3050069

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_206
Malus domestica
SE3050069
PIF/harbinger
MadP6
MDC029428.27:4403-4683
TAA
AGGTACCATTTGGTACGTGGGACGGGACGGGATGGAACAGGACG

Secondary structure and sequence

TSD TIR

5'

3'

TA       A            G       G          G    -------------------------------------------     TTC GTCCCACGTTTGGTGCGCCTAAAAACTGTGGAATGGGTTGTCCCATGGGACGAAGTTTGGCTGATT
  AGGTACC TTTGGTACGTGG ACGGGAC GGATGGAACA GACG                                           AGCCG   C                                                                  
  ||||||| |||||||||||| ||||||| |||||||||| ||||                                           |||||   |                                                                   
  TCCATGG AAACCATGCGTC TGCCCTG CCTGCCTTGT CTGC                                           AGTAT   T                                                                  
AA       C            -       Y          A    CTTGTCTACTACATTTATAACTTTTTCTATTCCTCTTTAAAAC     --- TTACAATATTTAAACACAAGGTGCCTACACCTTGGCCAGCAAGGTCCCCCTTCTCCACCTTGCTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050069

TAAGGTACCATTTGGTACGTGGGACGGGACGGGATGGAACAGGACGAGCCGTTCCGTCCCACGTTTGGTGCGCCTAAAAACTGTGGAATGGGTTGTCCCATGGGACGAAGTTTGGCTGATTTTTCGTTCCACCTCTTCCCCCTGGAACGACCGGTTCCACATCCGTGGAACACAAATTTATAACATTTTATGACAAAATTTCTCCTTATCTTTTTCAATATTTACATCATCTGTTCCGTCATGTTCCGTCCYGTCCCGTCTGCGTACCAAACGGTACCTAA

Copy Cancel