SE3020071

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_208
  • Malus domestica
  • SE3020071
  • Mutator
  • MadM5
  • MDC005957.145:1255-1442
  • CAAATGAGG
  • GGAGAGATTTTTTAGTGTAATCGTTACACGAAATGGTACATCACGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAATGAG            T   -  A  C TT   CG  A     C         CATT    A   T      T  -G   GCTAAAAATTTA
        GGAGAGATTTTT AGT GT AT G  ACA  AA TGGTA ATCACGTGT    ATGT AAT GTGGGA AT  TGT            
        |||||||||||| ||| || || |  |||  || ||||| |||||||||    |||| ||| |||||| ||  |||             
        CCTCTTTAAAAA TCA CA TA C  TGT  TT ATCAT TGGTGCACA    TATA TTA TACCCT TA  ATA            
GGAGTAAA            -   A  C  C TT   -A  C     A         AAAT    C   C      T  AA   AAAACTTCAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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