SE3020072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_209
  • Malus domestica
  • SE3020072
  • Mutator
  • MadM31
  • MDC013377.132:906-1126
  • GCTAAAATC
  • CGAATGAGGCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GCTAAAAT         CC  -ACTCC       - TTTGTGAGGATTTTGGGGATCCTCAAATCATATCCGTTTATCGTACATCGTGCGGCCAGCTTTCTTCAGGTACTG
        CGAATGAGG  CC      AGATCCT C                                                                           
        |||||||||  ||      ||||||| |                                                                           T
        GTTTACTCC  GG      ACCCCTA G                                                                           
TTAAAATC         TA  AGAAAC       A AATTTAGCACAGACAAGTAGAATATAGTACGTCAGTCTTTAATAAAATTCATGAAAAGAAATTTTAATTTATACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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