Plant MITE

SE3020076

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_213
Malus domestica
SE3020076
Mutator
MadM27
MDC016430.246:1638-1854
ATCAAGTTC
GGATTTGGATCCTCTCCTAAGCTTAGAAGGCTAAGCTTCACGAGCAAATCACACGGGCCGTTGAATTTTGATCTAACTACTACAA

Secondary structure and sequence

TSD TIR

5'

3'

ATCAAGTTC                CTA       A     A   -   AC          C     C     A             TA      TTATT      TTTA
         GGATTTGGATCCTCTC   AGCTTAG AGGCT AGC TTC  GAGCAAATCA ACGGG CGTTG ATTTTGATCTAAC  CTACAA     ATAACT    
         ||||||||||||||||   ||||||| ||||| ||| |||  |||||||||| ||||| ||||| |||||||||||||  ||||||     ||||||     
         CCTAAACCTAGGAGAG   TCGAATC TCCGA TCG AAG  TTCGTTTAGT TGCTT GCAAC TAAAACTAGGTTG  GATGTT     TGTTGG    
CTTGAACTA                TAC       C     C   T   -A          A     A     C             TC      -TGTC      TGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020076

ATCAAGTTCGGATTTGGATCCTCTCCTAAGCTTAGAAGGCTAAGCTTCACGAGCAAATCACACGGGCCGTTGAATTTTGATCTAACTACTACAATTATTATAACTTTTAGAGTGGTTGTCTGTTTGTAGCTGTTGGATCAAAATCCAACGATTCGTATGATTTGCTTAGAATGCTCAGCCTCCTAAGCTCATGAGAGGATCCAAATCCATCAAGTTC

Copy Cancel