SE3050080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_217
  • Malus domestica
  • SE3050080
  • PIF/harbinger
  • MadP7
  • MDC009817.314:20561-20800
  • ATA
  • GAGCTCGTTTGGATATGTTTTTAAAATGACTGAAAACGTTTTTGGAGAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA              A                    A               -----------T    TTAGAACCAATCTTTAGTAAAGATGCAAATAAATCCTGAAAAAGCACTTAAAGTG
   GAGCTCGTTTGGAT TGTTTTTAAAATGACTGAAA CGTTTTTGGAGAAAA            GTTT                                                       
   |||||||||||||| |||||||||||||||||||| |||||||||||||||            ||||                                                       T
   CTCGAGCAAACTTA ACGAAAATTTTACTGACTTT GCGAAAATCTCTTTT            AGGT                                                       
ATA              C                    C               TTTTTAAACCCG    TTTCGTGAATTTCACGAAGGACTTTCGTTGTGTATTGACCACGAAGAACGTATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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