Plant MITE

SE3020087

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_224
Malus domestica
SE3020087
Mutator
MadM8
MDC011013.258:1174-1349
TTTATAATA
TTATAATAGGGTAATGTTAGGGAGACTAAATTTTTTAAACCAAATGATGTG

Secondary structure and sequence

TSD TIR

5'

3'

 T      T                       T    ------------                GTTGTAGATGATTGGA        T   TGT   TTAA
  TTATAA AGGGTAATGTTAGGGAGACTAAA TTTT            TAAACCAAATGATGTG                TTATTAAT AAG   CGA    
  |||||| ||||||||||||||||||||||| ||||            ||||||||||||||||                |||||||| |||   |||    C
  AATATT TCCTATTACGATCCCTCTGGTTT AAAA            GTTTGGTTTACTATAC                AGTGGTTA TTC   GTT    
AT      -                       T    TTTAATTTAAAC                ----------------        -   TTT   TATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020087

TTTATAATAGGGTAATGTTAGGGAGACTAAATTTTTTAAACCAAATGATGTGGTTGTAGATGATTGGATTATTAATTAAGTGTCGATTAACGTATTTGTTTCTTATTGGTGACATATCATTTGGTTTGCAAATTTAATTTAAAATTTTGGTCTCCCTAGCATTATCCTTTATAATA

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