SE3020088

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_225
  • Malus domestica
  • SE3020088
  • Mutator
  • MadM34
  • MDC001092.195:12842-13059
  • TTGAAATAG
  • GGAAAGAGATCCTCTCCGGATCTCTTCCACCAAGGCCACCAGATCAAGTGATCCGGGCCGTTGAAATTTCATCCAACGGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
   TTGAAATA                           C            A            C     G                     AAAAATTATTATAG   T
           GGAAAGAGATCCTCTCCGGATCTCTTC ACCAAGGCCACC GATCAAGTGATC GGGCC TTGAAATTTCATCCAACGGTC              CTT 
           ||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||||||||||||||||              ||| T
           CCTTTCTCTAGGAGAGGTCTGGAGAAG TGGTTCCGGTGG CTAGTTCACTAG CCCGG AACTTTAAAGTAGGTTGCCGG              GGA 
TAATAACGTTC                           T            C            A     A                     GTGGACAAAACTAG   A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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