Plant MITE

SE3020089

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_226
Malus domestica
SE3020089
Mutator
MadM11
MDC006118.186:464-629
TTCCCTTAT
GGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACCCTTTGTTAATTTCTGTCCGTTGATC

Secondary structure and sequence

TSD TIR

5'

3'

TTCCCTTAT        C             C                       GT      CT T      -   TTCTTCA
         GGGGTGTG TATCCACACACCC TTTTTACTTCTCACACACCCTTT  TAATTT  G CCGTTG ATC       
         |||||||| ||||||||||||| |||||||||||||||||||||||  ||||||  | |||||| |||       A
         CCCTACAC ATAGGTGTGTGGG AAAAATGAAGAGTGTGTGGGAAG  ATTAAA  C GGCAGC TAG       
TATTCCCTT        T             A                       --      AC C      C   CTTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020089

TTCCCTTATGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACCCTTTGTTAATTTCTGTCCGTTGATCTTCTTCAATTCATTCGATCCGACGGCCCAAAATTAGAAGGGTGTGTGAGAAGTAAAAAAGGGTGTGTGGATATCACATCCCTTCCCTTAT

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