SE3020092

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_229
  • Malus domestica
  • SE3020092
  • Mutator
  • MadM35
  • MDC014088.189:1715-1953
  • TTAAATTTA
  • AAATTTAGGATTTGGATCTCAGTCAGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       -   TTT     T AG  -A    SAAA    -  A        AAAT                  Y            G       ---AA    TTTG   TT    -     AA
  AAATTTA GGA   GGATC C  TC  GATT    TTGT AG GATTCTAG    CCTCATATCTTAGTCATT ATCGTGTATCAT TGGTCAG     ATCA    ACT  TTTG ATTTA  
  ||||||| |||   ||||| |  ||  ||||    |||| || ||||||||    |||||||||||||||||| |||||||||||| |||||||     ||||    |||  |||| |||||   
  TTTAAAT CCT   CCTAG G  AG  CTAG    AACA TC CTAGGATT    GGGGTGTAGAATCAGTAA TAGCATATAGTA GCTAGTC     TAGT    TGA  AAAC TAAAT  
         T   TCT     - AG  GC    GTAA    C  -        CCTT                  G            Y       AAAAA    -CCA   -T    A     TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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