Plant MITE

SE3020095

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_232
Malus domestica
SE3020095
Mutator
MadM10
MDC002331.301:4315-4563
AATCAATAA
GGACCAGGATTGTCTGCCCTCCTAGTTCCCGTGCCTTC

Secondary structure and sequence

TSD TIR

5'

3'

AATCAATAA    C            C     A    C         --CCATA     C   ---------               T                       AC    C    TTGTCTTAT
         GGAC AGGATTGTCTGC CTCCT GTTC CGTGCCTTC       CTCTT TGT         TTGTGTGGTCACGGT AAGCCACGTCAACATTTTATATT  TATT ATTT         
         |||| |||||||||||| ||||| |||| |||||||||       ||||| |||         ||||||||||||||| |||||||||||||||||||||||  |||| ||||          
         CCTG TCCTAACAGACG GAGGA CGAG GCACGGGAG       GAGAA ACG         AACACACCAGTGCCA TTCGGTGCAGTTGTAAAATATAA  ATAA TAAA         
AATAACTAA    T            A     A    T         AATACGG     C   GGAGAACAA               C                       --    A    TATCTCTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020095

AATCAATAAGGACCAGGATTGTCTGCCCTCCTAGTTCCCGTGCCTTCCCATACTCTTCTGTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTACTATTCATTTTTGTCTTATTATCTCTATAAATAAATAAATATAAAATGTTGACGTGGCTTCACCGTGACCACACAAAACAAGAGGGCACAAGAGGGCATAAGAGGGCACGTGAGCAAGGAGAGCAGACAATCCTTGTCCAATCAATAA

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