SE3020099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_236
  • Malus domestica
  • SE3020099
  • Mutator
  • MadM38
  • MDC016615.316:206-416
  • CAAATCAAA
  • GAGTGCATTTTTTCTCACCACCATTTAGTGTGGTGTATGCTCACCATCCTATTTATCACCGTTAAATGAGTTTGAATTTCGAGATTCGTGTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
   CAAATCAAA    GC       -                                             C     A                     CG    G AG
            GAGT  ATTTTTT CTCACCACCATTTAGTGTGGTGTATGCTCACCATCCTATTTATCA CGTTA ATGAGTTTGAATTTCGAGATT  TGTA T  
            ||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||  |||| |  A
            TTCA  TAAAAAA GAGTGGTGGTAAATCACACCACATACGAGTGGTGGGATAAATAGT GTAAT TACTCAAACTTAAAGCTCTAA  ACAT A  
TAAACTAAACCC    --       C                                             A     C                     --    G AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3