Plant MITE

SE3020104

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_241
Malus domestica
SE3020104
Mutator
MadM12
MDC018101.293:33387-33617
GTATAACTT
TGGAAAAGAATCCTCGCCGGATCTTTTTCTTGGGGATCCT

Secondary structure and sequence

TSD TIR

5'

3'

GTATAACT        A       CC          CT        -  AGGAATTTTG     A   CCG            C  T       TTT     AGG  CT     -T     T
        TGGAAAAG ATCCTCG  GGATCTTTTT  TGGGGATC CT          TGATC TGA   TTCATCGTACAT GT CGGTCAG   TCATT   TA  ATTTA  ATTTA 
        |||||||| |||||||  ||||||||||  |||||||| ||          ||||| |||   |||||||||||| || |||||||   |||||   ||  |||||  ||||| T
        ACCTTTTC TAGGAGC  CCTAGGAAAA  ATCCCTAG GA          ACTAG ACT   AAGTAGCATGTA CA GCCAGTC   AGTAA   GT  TAAAT  TAAAT 
TTCAATAT        C       AA          AT        A  ----------     C   AAA            A  C       TTT     --A  TT     TT     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020104

GTATAACTTGGAAAAGAATCCTCGCCGGATCTTTTTCTTGGGGATCCTAGGAATTTTGTGATCATGACCGTTCATCGTACATCGTTCGGTCAGTTTTCATTAGGTACTATTTATATTTATTTTAAATTTTAAATTTTGAAATGATTTCTGACCGCACAATGTACGATGAAAAATCACGATCAAGAGATCCCTATAAAAAGGATCCAACGAGGATCCTTTTCCATATAACTT

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