SE3050107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_244
  • Malus domestica
  • SE3050107
  • PIF/harbinger
  • MadP4
  • MDC011821.479:9129-9563
  • TTA
  • AGGGGGGTGTATTCAATTGGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT                      TTTTAAA          TCT    A        G    -----------------ATTCAATT       C  GT  --  C   GAAATTTTAGGTGTATTCAATTAGAATTTTAAGATAGTTTATTAAAATCCTTAGAAATCTGGGTGTATTCAATTAGAATTTTAAAGAAGTTTATAACATTCCAGGTGTATTCAATTAGAA
  AGGGGGGTGTATTCAATTGGGA       GGATTTTAAT   TTTA TGAATCTA GGGT                         AGGATTT AA  GA  TT TCT                                                                                                                        
  ||||||||||||||||||||||       ||||||||||   |||| |||||||| ||||                         ||||||| ||  ||  || |||                                                                                                                        A
  TCCCCCCACATAAGTTAACTCT       TCTAAAATTA   AAAT ATTTAGGT CCTA                         CTCTAAG GT  TT  TT TAA                                                                                                                        
AT                      TACACTC          CCT    -        A    AAAATACCTCAAATTAACTAAACAT       -  --  AT  -   AACTAAGTTAAGGGAACTTTAGAGTACCCTTCTACACTCTAAACATCTACGAATTTTATGTGATGCTTTAGAGAGTTTAAGGGAGATTAAGGAGTTGAAAGAGTTTAAGAAATTTTAGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End