Plant MITE

SE3060114

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_251
Malus domestica
SE3060114
Mim
MadMi1
MDC010065.355:2307-2535
ATATATA
TATAGGAAGCCTTTAAGGGAAGRGATTCTCATTTTTCAAAAAAATTGGGATATCCTCTTGACCGTTAAATTTGGCTTTAATGAAATCCTGTGGTTGAGATTTTGT

Secondary structure and sequence

TSD TIR

5'

3'

     ATA      AAG             R                     T     -                 A                  CC             TT  GACC
        TATAGG   CCTTTAAGGGAAG GATTCTCATTTTTCAAAAAAA TGGGA TATCCTCTTGACCGTTA ATTTGGCTTTAATGAAAT  TGTGGTTGAGATT  GT    
        ||||||   ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||  |||||||||||||  ||     
        ATGTCC   GGAAATTCCTTTC CTAGGGGTAAAAAGTTTTTTT ACCCT GTGGGAGAATTGGTAAT TAAACCGAAATTACTTTA  ACATCAACTCTAA  TA    
ATATATAC      --G             C                     T     T                 C                  AA             TT  GTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3060114

ATATATAGGAAGCCTTTAAGGGAAGRGATTCTCATTTTTCAAAAAAATTGGGATATCCTCTTGACCGTTAAATTTGGCTTTAATGAAATCCTGTGGTTGAGATTTTGTGACCTGTGATTTAATCTCAACTACAAAATTTCATTAAAGCCAAATCTAATGGTTAAGAGGGTGTTCCCATTTTTTTTGAAAAATGGGGATCCCTTTCCTTAAAGGGCCTGTACATATATA

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