Plant MITE

SE3020115

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_252
Malus domestica
SE3020115
Mutator
MadM9
MDC017327.199:6870-7110
CAAATTTTT
AAATTTTTGAGATAAGATTCTCGTCGAATTCTCTTTGTGAGGATCTCGGGAATCCTTTAATTCTGTGTGTTTATCGTACATCCTGCGGTCAG

Secondary structure and sequence

TSD TIR

5'

3'

C       T      A           A                 -  C               C   GTG         C   C         TTTTT   AAT   TGTTTGTGTTCAATTT
 AAATTTT GAGATA GATTCTCGTCG ATTCTCTTTGTGAGGAT CT GGGAATCCTTTAATT TGT   TTTATCGTA ATC TGCGGTCAG     GTC   TAC                
 ||||||| |||||| ||||||||||| ||||||||||||||||| || ||||||||||||||| |||   ||||||||| ||| |||||||||     |||   |||                T
 TTTAAAA CTCTAT TTAGGAGTAGC TAGGAGAAACACTCCTA GA TTTTTAGGAAATTAG ACA   AAGTAGCAT TAG ACGCCAGTC     TAG   TAA                
T       C      C           C                 A  -               A   ATA         A   C         ---TT   ---   AATTTAATATAATAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020115

CAAATTTTTGAGATAAGATTCTCGTCGAATTCTCTTTGTGAGGATCTCGGGAATCCTTTAATTCTGTGTGTTTATCGTACATCCTGCGGTCAGTTTTTGTCAATTACTGTTTGTGTTCAATTTTAAATAATATAATTTAAAATGATTTCTGACCGCACGATATACGATGAAATAACAAGATTAAAGGATTTTTAGAATCCTCACAAAGAGGATCCGATGAGGATTCTATCTCCAAAATTTT

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