SE3020116

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_253
  • Malus domestica
  • SE3020116
  • Mutator
  • MadM25
  • MDC010908.210:2707-2879
  • TAGATTTTA
  • TAGATTTTAAGGAAAACTAATGAAAATGGCTTGAAAACTTTGAGTTTTAATGATAAGGACA

Secondary structure and sequence

TSD    TIR
5'



3' 
     T    A    AAC         TG     AAA   T GA          T   -G   -AAATAAAGGAT     G   AGTA
 TAGA TTTA GGAA   TAATGAAAA  GCTTG   ACT T  GTTTTAATGA AAG  ACA            AAAGT AAT    
 |||| |||| ||||   |||||||||  |||||   ||| |  |||||||||| |||  |||            ||||| |||    C
 ATTT AGAT CCTT   ATTGCTTTT  TGGGC   TGA A  TGAAATTGCT TTT  TGT            TTTCA TTA    
T    T    C    GAA         TA     -CA   C AG          T   GG   AAAAATGTGATT     G   GTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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