SE3020124

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_261
  • Malus domestica
  • SE3020124
  • Mutator
  • MadM43
  • MDC018256.371:15894-16131
  • AATGTGAAA
  • GGACAAGGATCGTCAGCCATTCCATTTCTGGTGTTCTTCCGTGTCCTCTTGTTTGTGTGGTCACGTTTAAGCTACGATAACATTTTATATTATTATTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATGTGAAA          C   A   A    -    C           C              -           T     C    A                 -A     TTTTGTCTT
         GGACAAGGAT GTC GCC TTCC ATTT TGGTGTTCTTC GTGTCCTCTTGTTT GTGTGGTCACG TTAAG TACG TAACATTTTATATTATT  TTTAT         
         |||||||||| ||| ||| |||| |||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||  |||||          
         CCTGTTCCTA CGG TGG GAGG TGAA ACCATAAGAAG CACGGGAGGATAAA TACACCAGTGC AATTC GTGC ATTGTAAAATATAATAA  AAATA         
AAAGTGTAA          A   A   -    A    A           A              A           C     A    A                 AA     TCTCTATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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