SE3020125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_262
  • Malus domestica
  • SE3020125
  • Mutator
  • MadM44
  • MDC010355.385:193-410
  • GAGTCATGT
  • CATGTGGATTTGGATCCTCTCCTGAGCAGAGGGTCCGAATCCTGCTGACCAAGCAACACAGACCGTTGGATCAAATTTCAATGGTTATAATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GAGT    ---  G         C    C            C    TC                 CA  C            T              T  TTATAATTTTTA
    CATG   TG ATTTGGATC TCTC TGAGCAGAGGGT CGAA  CTGCTGACCAAGCAACA  GA CGTTGGATCAAA TTCAATGGTTATAA TA            
    ||||   || ||||||||| |||| |||||||||||| ||||  |||||||||||||||||  || |||||||||||| |||||||||||||| ||             
    GTAC   GC TAAACCTAG AGAG ACTCGTCTCCCA GCTT  GACGACTGGTTCGTTGT  CT GCAACCTAGTTT AAGTTGCCAATGTT GT            
   T    TGA  G         T    A            T    CC                 TC  A            C              T  TTTTTCCAAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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