SE3020128

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_265
  • Malus domestica
  • SE3020128
  • Mutator
  • MadM15
  • MDC000803.286:27728-27944
  • AATAAATTG
  • ATTGGGGAAGGGATCCTCTTCGGATCTCTTCCTTCTAATCCACCAAATCAGTGGATCTATGTCATTGAAATTTGATCTAACGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
 AATAA         GG    C               C          C               A                          -    -   TTATAACTTT
      ATTGGGGAA  GATC TCTTCGGATCTCTTC TTCTAATCCA CAAATCAGTGGATCT TGTCATTGAAATTTGATCTAACGGCT GAAG TTG          
      |||||||||  |||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||          T
      TAACCTTTT  CTAG AGAAGCCTAGGGAAG AGGATTAGGT GTTTAGTCACCTAGG ATGGTAACTTTAAACTAGATTGCCGA GTTT GCC          
ATTAAA         -A    A               A          A               C                          T    G   CCGGGTGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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