Plant MITE

SE3020132

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_269
Malus domestica
SE3020132
Mutator
MadM10
MDC000651.328:24920-25120
AAATGTAGA
GATGTAGGATTCTCTCCCCTATTTTTTCCCCTTCCTTTCCCTCARCTTTTATTT

Secondary structure and sequence

TSD TIR

5'

3'

AAATGTAGAA   G              CTA        --------  -        C    --RC        G   GGTCACAGTTAAATCATGTCAACATCTT
          GAT TAGGATTCTCTCCC   TTTTTTCC        CC TTCCTTTC CTCA    TTTTATTT AAC                            
          ||| ||||||||||||||   ||||||||        || |||||||| ||||    |||||||| |||                            A
          CTG ATCCTAAGAGAGGG   AAAAAAGG        GG AGGGGAAG GAGT    GAAATAAA ACA                            
AAGATGTAAC   -              -AA        TAGTAAAA  T        A    ATAA        -   GAGAGAGAAAGATATTTTTTTTAATTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020132

AAATGTAGAAGATGTAGGATTCTCTCCCCTATTTTTTCCCCTTCCTTTCCCTCARCTTTTATTTGAACGGTCACAGTTAAATCATGTCAACATCTTATATTAATTTTTTTTATAGAAAGAGAGAGACAAAATAAAGAATATGAGAGAAGGGGATGGAAAATGATGGAAAAAAAAGGGAGAGAATCCTAGTCCAATGTAGAA

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