SE3050138

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_275
  • Malus domestica
  • SE3050138
  • PIF/harbinger
  • MadP6
  • MDC010340.127:887-1209
  • TAA
  • AGGTATCGTTTGGTATGTGGGACGGGACGGAACGGAATGGGACG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  ----                          -------     ----- T   TCCCACATTTGGTGCGCTTAAAACGGGTGGAACACGCTGTTCCACAGGACGAGTTTTTGGTGAATTTTCGTTCCACCACACCCCCCTGGAACGACATG
  AGGTATCGTTTGGTATGT    GGGACGGGACGGAACGGAATGGGACG       AGGCG     T CCG                                                                                                  
  ||||||||||||||||||    ||||||||||||||||||||||||||       |||||     | |||                                                                                                   
  TCCATAGCAAACCATACG    CCCTGCCCTGCCTTGTTTTACCCTGC       TGCCC     T GTC                                                                                                  
AA                  TTTG                          ACTGCCC     TATCC -   CTGCCTTGCCTCTTCCTCATTTCTACGGGAGCTTACCTTTGTTCCTCCTTCTTCTTCCTCTGTCTCTACAATATTAAAACACAAGGTGCCTACACCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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