SE3020139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_276
  • Malus domestica
  • SE3020139
  • Mutator
  • MadM11
  • MDC013475.340:5385-5548
  • TTTAATAAG
  • AAGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCCCACACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAAT          C   C       C C            C       CTTG       ATAT  -  T    TTCTTCA
      AAGGGGTGTG TAT CACACAC C TTTTTACTTCTC CACACCC    TTAATTT    CC TT GATC       
      |||||||||| ||| ||||||| | |||||||||||| |||||||    |||||||    || || ||||       A
      TTCCCTACAC ATA GTGTGTG G AAAAATGAAGAG GTGTGGG    AATTAAA    GG AG CTAG       
AATAAT          T   A       A A            A       --AA       AGCC  C  C    CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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