SE3020140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_277
  • Malus domestica
  • SE3020140
  • Mutator
  • MadM46
  • MDC018186.206:22507-22884
  • TTTAGTTTT
  • GGCATTTTAGCCAAAATGGTCCCTGAGATTTGCATAACTCATCACTTTGGTTCCTGAGATTTGAAATCAATAGAAGTGGTCTCTGAGTTTGTCCATCATCAATCATTTTGGTCATTCCTTGAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAGTTTTT   A      C         C                   A            C                                                              C        TTAAGGACCA        AAATATACCTCAATTTAATAAACAATTGGCCAAAATGATTT
          GGC TTTTAG CAAAATGGT CCTGAGATTTGCATAACTC TCACTTTGGTTC TGAGATTTGAAATCAATAGAAGTGGTCTCTGAGTTTGTCCATCATCAATCATTTTGGTCATT CTTGAAAA          AATGACAA                                         
          ||| |||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          ||||||||                                          
          CCG AAAATC GTTTTACCA GGACTCTAAACGTATTGAG AGTGAAATCAGG ACTCTAAACTTTAGTTATCTTCACCAGGGACTCAAACAGGTGGTAGTTAGTAAAACCAGTAA GAACTTTT          TAGAAGTA                                         
TTTTTGATTT   A      A         A                   G            A                                                              A        ----------        ATTTATTTCTATATTACTGTTTTTATGAGAATTAAAAACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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