SE3020141

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_278
  • Malus domestica
  • SE3020141
  • Mutator
  • MadM36
  • MDC001011.219:3094-3280
  • CAAGTAAGG
  • GGGTAATGTTAGAGAGATTAAATTTGTAAACAAAGTTTTGAAAACTAAAAGACATG

Secondary structure and sequence

TSD    TIR
5'



3' 
   CAAGTAA            A             TAA  A      T          A   A  -----------------A    T ATGATTGATTTATT
          GGGTAATGTTAG GAGATTAAATTTG   AC AAGTTT GAAAACTAAA GAC TG                  AAGT G              
          |||||||||||| |||||||||||||   || |||||| |||||||||| ||| ||                  |||| |              A
          CCCATTACGATC TTCTGATTTAAAT   TG TTTAAA CTTTTGATTT TTG AC                  TGCA A              
TAATGAACAA            C             CTC  A      -          A   C  AATGGTTATTCTTACTTA    - ATAGTTGCAAATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3