Plant MITE

SE3050145

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_282
Malus domestica
SE3050145
PIF/harbinger
MadP9
MDC016463.168:2270-2612
TTA
GGCTGGTTTGGTACTGAGGTG

Secondary structure and sequence

TSD TIR

5'

3'

 TTA             C  AG   -ATTCT           G ATCAAAAAAAG       -    TTTGTGTTTGGTAAACATTTAGCTTCAGTTTTTTTTCACAGTTTTGGGTGAAAAAAAGCCAAAAACAAGAAGCTGCAAAACCCAGCTTMAAAACTGGCTTTTTCACATCTG
    GGCTGGTTTGGTA TG  GTG      GAAAAAAGCTG T           TTGGGAG CTTT                                                                                                               
    ||||||||||||| ||  |||      ||||||||||| |           ||||||| ||||                                                                                                               T
    CCGACTAAACCAT AC  CAC      TTTTTTTCGAC A           AGACGAC CGAT                                                                                                               
ATTC             A  AA   GAAACT           G -----------       A    ACTCTTATTCATCGACACTTTATTTCGTCGTCTCACAAACCATTTGAAAAAACATTTTCACGAAAACTTTTTTTTTTGTCATAATATCACAAACCATTTGAAAATACATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050145

TTAGGCTGGTTTGGTACTGAGGTGATTCTGAAAAAAGCTGGTATCAAAAAAAGTTGGGAGCTTTTTTGTGTTTGGTAAACATTTAGCTTCAGTTTTTTTTCACAGTTTTGGGTGAAAAAAAGCCAAAAACAAGAAGCTGCAAAACCCAGCTTMAAAACTGGCTTTTTCACATCTGTTTTACATAAAAGTTTACCAAACACTATAATACTGTTTTTTTTTTCAAAAGCACTTTTACAAAAAAGTTTACCAAACACTCTGCTGCTTTATTTCACAGCTACTTATTCTCATAGCACAGCAGAAGCAGCTTTTTTTTCAAAGCACAACAATACCAAATCAGCCCTTA

Copy Cancel