SE3050147

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_284
  • Malus domestica
  • SE3050147
  • PIF/harbinger
  • MadP4
  • MDC000565.206:62272-62706
  • TTA
  • AGGGGGGTGTATTCAATTGGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT                      TTTTA            TCT    A        G    ATTCAATC   -  -  --   GT   - CTC           ---G  TATTCAATTAGAATTTTAAAATAGTTTATTAAAATCCTTAGAAATCCAGGTGTATTCAATTAAGATTTTAAAGAAGTTTATAACATTCTAGGTGTATTCAATTAGAAATTGATT
  AGGGGGGTGTATTCAATTGGGA     AGGGATTTTAAT   TTTA TGAATCTA GGGT        AGG AT TT  TAA  GAT T   TGAAATTCTAG    TG                                                                                                                  
  ||||||||||||||||||||||     ||||||||||||   |||| |||||||| ||||        ||| || ||  |||  ||| |   |||||||||||    ||                                                                                                                  T
  TCCCCCCACATAAGTTAACTCT     TCTCTAAAATTA   AAAT ATTTAGGT CCTA        CCT AA TT  CTA  AAC T   CTCTAAGGTAT    TA                                                                                                                  
AT                      TACAC            CCT    -        A    --AAAATA   C  A  AA   --   A ---           ATTT  AAACTAAGTTAAGGGAGCTTTAGAGTACCCTACTCCACTCTAAACACCTATGAATTTTATGTGATGCTTTAGAGAGTTTAAGGGAGATTAAGGAGTTGAAAGAGTTTAAGAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End