SE3020149

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_286
  • Malus domestica
  • SE3020149
  • Mutator
  • MadM4
  • MDC040048.9:2986-3173
  • AATAAGAAA
  • GGGTAATGCTAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAAGAAA        C    AAAAC        T        -ATTAC        T      TCACTAAT  -GA    GCAC      CA  GCT
         GGGTAATG TAGG     TAAATTTG AGATAAAA      AAACTAAA GATGTG        AG   ATGA    GTTTAT  AC   
         |||||||| ||||     |||||||| ||||||||      |||||||| ||||||        ||   ||||    ||||||  ||    
         CCCATTAC ATCC     ATTTAAAC TCTGTTTT      TTTGATTT CTGTAC        TC   TACT    CAAATA  TG   
AAAGAATAA        A    CTCTA        T        AAAAYT        C      ------CT  AAC    -AAC      -A  AAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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