Plant MITE

SE3020150

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_287
Malus domestica
SE3020150
Mutator
MadM4
MDC020045.313:873-1048
TTAATTTTA
AGGGTAATGCTAGGGAGACTAAATTCGTAGACCAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TTAATTTT         C    G   C      C     CC    TTTATAAACTA       T    GTT ATG    G    T   TT
        AGGGTAATG TAGG AGA TAAATT GTAGA  AAAT           ACTGATA GAAA   G   ATTG ATTA TAC  
        ||||||||| |||| ||| |||||| |||||  ||||           ||||||| ||||   |   |||| |||| |||   
        TCTCATTAC ATCC TCT ATTTAA CGTTT  TTTA           TGGTTAT CTTT   C   TAAT TAGT GTG  
ATTTTAAT         A    A   A      A     AA    ---CTACACCG       T    ATT GTG    -    T   AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020150

TTAATTTTAGGGTAATGCTAGGGAGACTAAATTCGTAGACCAAATTTTATAAACTAACTGATATGAAAGTTGATGATTGGATTATTACTTAAGTGTTGATTAATGTGCTTATTTCTTATTGGTGCCACATCATTTAATTTGCAAATTTAATCTACCTAACATTACTCTTAATTTTA

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