SE3020159

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_296
  • Malus domestica
  • SE3020159
  • Mutator
  • MadM48
  • MDC013745.338:10637-10852
  • GATCAATTT
  • GATC

Secondary structure and sequence

TSD    TIR
5'



3' 
         AATTT                        A           A  A  A                         TA               TTTTTATAACTTTT G   AC
     GATC     GGATCCGGATCCCCTCTTGACCTT AAAAACTGAGC TG TG GCAGGCAATCATGGCCGTTGAAATT  ATCTAACGGCTACAA              A AGG  
     ||||     |||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||  |||||||||||||||              | |||   
     CTAG     CCTAGGCCTAGGGGAGGATTGGAA TTTTTGACTCG AC AC TGTCCGTTAGTACTGGCAACTTTAA  TAGGTTGCCGATGTT              T TCC  
TTTAA    -----                        A           A  A  C                         CC               -------------- G   TC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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