Plant MITE

SE3020163

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_300
Malus domestica
SE3020163
Mutator
MadM8
MDC005531.380:2795-2989
TTATTTTAA
TAAGGATAATATTAGAGATATCAAAATTTTAAATTAAATTTGTAAGCCAAATGACGTGGTTGTTGATGA

Secondary structure and sequence

TSD TIR

5'

3'

TTATTT          --AT       ----ATC     TT   -ATT            C    GAC   -           TTGAATT     -    GTA
      TAAGGATAAT    TAGAGAT       AAAAT  TAA    AAATTTGTAAGC AAAT   GTG GTTGTTGATGA       ATTAC TTAA   
      ||||||||||    |||||||       |||||  |||    |||||||||||| ||||   ||| |||||||||||       ||||| ||||   T
      ATTCCTATTA    ATCTTTA       TTTTA  ATT    TTTAAACGTTTG TTTA   TAC CAGTGGTTATT       TAGTG AATT   
AATTTT          CAGT       ATTTAAA     TT   ATTT            A    --A   A           -TTATAT     C    AGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020163

TTATTTTAAGGATAATATTAGAGATATCAAAATTTTAAATTAAATTTGTAAGCCAAATGACGTGGTTGTTGATGATTGAATTATTACTTAAGTATTGATTAACGTGATTATATTTTATTGGTGACACATAATTTAGTTTGCAAATTTTTTATTATTATTTTAAATTTAATTTCTATGACATTATCCTTATTTTAA

Copy Cancel