SE3020164

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_301
  • Malus domestica
  • SE3020164
  • Mutator
  • MadM50
  • MDC021746.215:3112-3644
  • ATCAAATTA
  • GGGTAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
 ATCAAATTA         ACCATTTGACCSCTTGAA     ACTCCAGTAGAAATTGACCTCCTRAACTATTTTTTTGGTAAATTAAACCCCTAAACTATTTGAAATCAGCCAATTAACCCCTTGTCGGTAGGTTCCACCCACAAGTTTGTGAAATTCAAAGGAAAATTAGTCTTTCCTTCATCAATTCTTACTTGTCAACTATAACCACCAATGAACTTATGACATTTGAAAACAAATAATGTATAATGACAATGTGAGATGGTCTGTTAT
          GGGTAAATT                  CTATT                                                                                                                                                                                                                                       
          |||||||||                  |||||                                                                                                                                                                                                                                       G
          CCCATTTAA                  AACTG                                                                                                                                                                                                                                       
AATTAAACTA         -------------CGCCA     GGGGATTTGATAAACAAACCATTTAATTGGGATACTTGATAAATTTTAAYCAGTTAATTGGGGAACGGTAATCTAACACATTAATTAAAGCAGTTTAAGTTCCCGTTTAATCAGTAAAGTGGTAGTTAATAATGAACAGTCGATATTGGTGGTTATTTTAAAACCGTGTACCTGTGGCTTATTTTTGTATATAGTTTTACTCTTTTGTATCTTTTTTTTTGGTTTGTAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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