Plant MITE

SE3050165

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_302
Malus domestica
SE3050165
PIF/harbinger
MadP8
MDC005543.399:8972-9277
TGA
AGGCCTCATTTGA

Secondary structure and sequence

TSD TIR

5'

3'

TG       A     WAAT            TA                   A   A   C       A          A         TA   A                                  T        AC     CCCA  AAA
  AGGCCTC TTTGA    GAGGATTGGTTT  GGTAGGACTATTCACTATA TTG AGG ATTTTAA GGAAGAAATG ATGACAAAT  CTT TTTTGTCCAAGTTGAAGGTTACTCATGAAGAATA TTGTCCCT  TAATC    CA   
  ||||||| |||||    ||||||||||||  ||||||||||||||||||| ||| ||| ||||||| |||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||  |||||    ||    
  TCCGGAG AAACT    CTCCTAACCGAA  CTATCCTGATAAGTGATAT AAT TCC TAAAATT CCTTCTTTAC TACTGTTTA  GAA AAAACAGGTTCAACTTCCAATGAGTACTTCTTAT AACAGGGA  ATTAG    GT   
AG       C     GTCT            -C                   -   C   A       G          C         AG   G                                  C        CA     CATA  AAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050165

TGAGGCCTCATTTGAWAATGAGGATTGGTTTTAGGTAGGACTATTCACTATAATTGAAGGCATTTTAAAGGAAGAAATGAATGACAAATTACTTATTTTGTCCAAGTTGAAGGTTACTCATGAAGAATATTTGTCCCTACTAATCCCCACAAAAAAATGATACGATTAACAGGGACAACTATTCTTCATGAGTAACCTTCAACTTGGACAAAAGAAGGAATTTGTCATCCATTTCTTCCGTTAAAATACCTCTAATATAGTGAATAGTCCTATCCAAGCCAATCCTCTCTGTCAAACGAGGCCTGA

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