Plant MITE

SE3020168

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_305
Malus domestica
SE3020168
Mutator
MadM51
MDC012348.290:4848-5037
TATTATTTG
GAATCGACATCCTCTATGGATCTCTGTATC

Secondary structure and sequence

TSD TIR

5'

3'

 TATTATTT    C  C       A     C   G    --------------CGAA  TT  G -   A AAAATCCGTGTTGTTGCAAAGAATGATTCGCAC
         GAAT GA ATCCTCT TGGAT TCT TATC                  GC  AA A ACA G                                 
         |||| || ||||||| ||||| ||| ||||                  ||  || | ||| |                                 C
         CTTA CT TAGGAGA GTCTA AGA ATGG                  CG  GG G AAT C                                 
TTTATTATC    A  C       A     A   G    TAGTAAAATTTAAAACGC  -A  - T   - AGATAAAGTGGCTAGGTGGAGTGTGTTTGATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020168

TATTATTTGAATCGACATCCTCTATGGATCTCTGTATCCGAAGCTTAAGAACAAGAAAATCCGTGTTGTTGCAAAGAATGATTCGCACCCTTAGTTTGTGTGAGGTGGATCGGTGAAATAGACTAATGGGAGCCGCAAAATTTAAAATGATGGTAGAGAAATCTGAAGAGGATCTCAATTCCTATTATTT

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