SE3020170

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_307
  • Malus domestica
  • SE3020170
  • Mutator
  • MadM4
  • MDC011784.299:1918-2106
  • ATATTGTTA
  • GAGTAATGTTAGGGATACTAAATTTGTAGACTAAATTTTGTAAACTAAATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATTGTTA               TAC                    T             CCTGGAA       A TGGATTATTATTTAAACGTTG
         GAGTAATGTTAGGGA   TAAATTTGTAGACTAAATTT GTAAACTAAATGA       GTTAATG T                     
         |||||||||||||||   |||||||||||||||||||| |||||||||||||       ||||||| |                     A
         CTCATTACGATCCTT   ATTTAAACATCTGATTTAAA CGTTTGATTTACT       CACAGTG G                     
ATTGTTATA               CTA                    -             ------A       - TTATTCTTTACTCGTGCAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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