SE3020177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_314
  • Malus domestica
  • SE3020177
  • Mutator
  • MadM52
  • MDC002287.316:4521-5216
  • TATTGCCAA
  • TTGCCAAGAGAAATTTTATTTGGACCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C   G  --A                 CTTTTC  CTC    A     A  TTAATATTTTGTTACC      CTCTAGTTTACCCTCATAAATTATAAACATAAATAAACTGGAAAAAYAAAAACTCATCAAACCTATTTCCCAACTGTTCTGGCGTCTCTTCCCTGTATTTGTTGGGTCTATCTCCCTCCCGACTGTTTTTTTTCCCTGATATTCTCTGTGTGTTCCCCCACCTCTCCCACACCCACCGATTCTTTGTGGTGGCTATTCCACCCAACGTCCAGTGAATCTTTCCATTTTTCTTCTATTGCGCGTGATAGGGCCTTGCTGTTAATAGGCAAAACTAAGCGGC
  TTG CAA AG   AATTTTATTTGGACCTA      CT   TCTA ACCCA CT                TAAACT                                                                                                                                                                                                                                                                                        
  ||| ||| ||   |||||||||||||||||      ||   |||| ||||| ||                ||||||                                                                                                                                                                                                                                                                                         
  AAC GTT TC   TTAAAATAAATCTGGGT      GA   AGAT TGGGT GA                TATTTT                                                                                                                                                                                                                                                                                        
     C   A  CCA                 TGTTAT  TAA    G     C  ----------------      TTTTGAAAAATACATTAAGGCTATAATAGGGAATATGTTTTATTTTATTCTTTGACTTTTAATTTATAGAAAGATGTGGGTAAGTTGGCTCTATCTTGGGTGTATGTAGCGGTGGTGAGTTGGTGGTGAAATCTGGAAGGAGGGAGAAGGAAGAGGACGTATATCTTCATCAATCCGCTCTAACGATTTAGTCGGTAGCGGAAGTTGTTGGGCTGGGTTATGTTTTAGGAAAACTGAGGTAAAACCTGAAGACGTTGTTCAGCGAATGTCTCAGCTGCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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