SE3020178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_315
  • Malus domestica
  • SE3020178
  • Mutator
  • MadM8
  • MDC010152.216:779-968
  • TAAATTTAT
  • TAAATTTATGGATAATGCTAGGAAAATCAAAATTTTAAACAAAATTTTGTAAACCAAATGATGTAGTTATTGATGATTAGATTATCATTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
     A    T           GGA                 A      T     CC  A G    A          ATT      -T   -    GTG
  TAA TTTA GGATAATGCTA   AAATCAAAATTTTAAAC AAATTT GTAAA  AA T ATGT GTTATTGATG   AGATTA  CAT TTAA   
  ||| |||| |||||||||||   ||||||||||||||||| |||||| |||||  || | |||| ||||||||||   ||||||  ||| ||||   T
  ATT AAAT CCTATTACGAT   TTTAGTTTTAAAATTTG TTTAAA CATTT  TT A TACA CAGTGATTAT   TTTAAT  GTA AATT   
TT   C    -           ATC                 A      -     AA  C G    -          --C      TT   T    AGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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