SE3050180

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_317
  • Malus domestica
  • SE3050180
  • PIF/harbinger
  • MadP13
  • MDC009630.367:547-762
  • TTA
  • CTGGTTTGATATTGAGGTGCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAGTA              AG       TATA     T      AAAAAAG    A   CAAAAAT      GGTAAACACTTAAAAACAACTTATTTTCATAATTTTTTAT
      CTGGTTTGATATTG  GTGCTTT    GAAAA GGAAAT       GCTG GCT       GTGTTT                                        
      ||||||||||||||  |||||||    ||||| ||||||       |||| |||       ||||||                                        G
      GACCAAACTATAAT  CACGAAA    CTTTT TTTTTA       CGAC CGA       CACTTT                                        
ATTCCC              GA       ----     T      ACAAAGA    A   -------      TATTCGAGTAAAAACGATGAAGTGTAAAAGTTAAAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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