SE3050181

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_318
  • Malus domestica
  • SE3050181
  • PIF/harbinger
  • MadP7
  • MDC019582.266:9069-9307
  • TAA
  • AGAGCTCGTTTGGATGTGCTTTTAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    CTC                     AACC  C    C      TA                   TCTTTGGTAAAAATGCAAGTAAATTCTGGAAAAACACTTAAAGTGCTTCT
  AGAG   GTTTGGATGTGCTTTTAAAAT    GA AGCG TTTTGG  AAAATGTTTTTAGAACTAA                                                  
  ||||   |||||||||||||||||||||    || |||| ||||||  |||||||||||||||||||                                                  T
  TCTC   CAAACCTACATGAAAATTTTA    CT TTGC AAAATC  TTTTACAAAAATCTAAGGT                                                  
AA    AAA                     CTAA  T    A      TC                   TTTCGTGAATTTCACGAAAAACGTTCTTCGTGGTTAATACACGAAGAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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