SE3020183

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_320
  • Malus domestica
  • SE3020183
  • Mutator
  • MadM53
  • MDC002200.219:3450-3664
  • TTTATAGAG
  • TTTATAGAGGGACCAGGATCCTCTCCTGAGCTAAGGATCAGGATCCTCCTCATCAAGGGATTGGGCCGTTGGATGAAAATCCAACGACTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
           G                           C                 -G  AT                         A      TTATTATAACTTTA    GA
 TTTATAGAGG ACCAGGATCCTCTCCTGAGCTAAGGAT AGGATCCTCCTCATCAA  GG  TGGGCCGTTGGATGAAAATCCAACG CTACAA              AAGG  
 |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||  ||  ||||||||||||||||||||||||| ||||||              ||||   
 AGATATTTCC TGGTCCTAGGAGAGGACTCGATTCCTA TCCTAGGAGGAGTAGTT  CC  ACCCGGCAACCTACTTTTAGGTTGC GATGTT              TTCC  
G          -                           C                 AA  AC                         C      ------------TG    CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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