SE3020185

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_322
  • Malus domestica
  • SE3020185
  • Mutator
  • MadM11
  • MDC037261.5:1464-1627
  • TATATACAG
  • TATACAGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACCCTTGTTAATTTCTATCCGTTAGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    C         C            CC                      G   A    TAT     A    TTCTTCA
  TATA AGGGGTGTG TATCCACACACC  TTTTTACTTCTCACACACCCTT TTA TTTC   CCGTT GATC       
  |||| ||||||||| ||||||||||||  |||||||||||||||||||||| ||| ||||   ||||| ||||       T
  ATAT TCCCCACAC ATAGGTGTGTGG  AAAAATGAAGAGTGTGTGGGAA AGT AAAG   GGCAA CTAG       
AC    A         T            AA                      A   A    -CC     C    CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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