Plant MITE

SE3020187

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_324
Malus domestica
SE3020187
Mutator
MadM10
MDC000851.372:12939-13136
TTAAAACAC
GGAGTAGGACTCTCTCCCTCTTATTCTCATCCATTTCCTTCATYTCCTTT

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAACAC    T    C        -     T    -A  CA        ATY      -------CAC       TTTTGTCTTATTGTCTCTATAAAAAAA
         GGAG AGGA TCTCTCCC TCTTA TCTC  TC  TTTCCTTC   TCCTTT          ATATTGT                           
         |||| |||| |||||||| ||||| ||||  ||  ||||||||   ||||||          |||||||                            
         CCTC TTCT AGAGAGGG AGGAT AGAG  AG  AAAGGGAG   AGGAGG          CAATGCC                           
CACAAAATT    C    A        G     T    AG  AG        ---      ATAAACTTGT       AAACCGGTGCAGTTGTAAAATATAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020187

TTAAAACACGGAGTAGGACTCTCTCCCTCTTATTCTCATCCATTTCCTTCATYTCCTTTCACATATTGTTTTTGTCTTATTGTCTCTATAAAAAAATCAATATAAAATGTTGACGTGGCCAAACCGTAACTGTTCAAATAGGAGGAGAGGGAAAGAGAGAGAGATTAGGAGGGGAGAGAATCTTCCTCCTTAAAACAC

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