SE3020191

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_328
  • Malus domestica
  • SE3020191
  • Mutator
  • MadM10
  • MDC007634.164:33172-33388
  • ATATAAAGT
  • GTGGAGGCAGATTCTCTGCCCTCCCACTTCCTGTGCCCTCCTATTTGTGTGGTCACGGTTAAACTACATCAACATTTTATATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATAAA               C    C                     -A                   A                     CTATTCC       CTTATT
       GTGGAGGCAGATTCT TGCC TCCCACTTCCTGTGCCCTCCT  TTTGTGTGGTCACGGTTAA CTACATCAACATTTTATATTA       TTTTTGT      
       ||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||       |||||||       
       TACCTCCGTCTAAGA ACGG AGGGTGAAGGACACGGGAGGA  AAACACACCAGTGCCAATT GGTGTAGTTGTAAAATATAAT       AAAAATA      
TGAAATA               T    T                     CA                   C                     ------A       TCTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3