SE3020195

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_332
  • Malus domestica
  • SE3020195
  • Mutator
  • MadM41
  • MDC011528.107:78-287
  • GTTGTTATC
  • CGGATCAGGATCCTCTCAGATGGAGAGGATCCTCCTGATCAAGGTCATCGGGCCGTTTATTTTTTATCCAACGGTTATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTGTTAT                 ------                        A    -       C                          TTATTATAACTTTTA    G
        CGGATCAGGATCCTCTC      AGATGGAGAGGATCCTCCTGATCA GGTC ATCGGGC GTTTATTTTTTATCCAACGGTTATAA               GAGG 
        |||||||||||||||||      |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||               |||| C
        GCCTAGTCCTAGGAGAG      TCTACTTCTCCTAGGAGGACTGGT CCGG TAGCCCG CAAGTAAAAAATAGGTTGCCGATGTT               TTCC 
CTATTGTT                 GACTCG                        -    G       T                          -------------TG    T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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