SE3020196

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_333
  • Malus domestica
  • SE3020196
  • Mutator
  • MadM46
  • MDC017867.210:10830-11212
  • ATTTAGGAT
  • GGATGGCTTTTTAGTCAAAATGGTCCTGAGATTGGCGTAACTCCTCAATTTGATCCCTGAGATTTGAAATAGATAGAAGTAGTCCCTAAGTTTGTCCACTAATTATTTTGGTCATTCCGTGAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTA                          -        G            A    A  C         -     A A       A    CTA             ---AT          A             CTCCA         -AA               T      ATT    TCA     TTTTC
     GGATGGCTTTTTAGTCAAAATGGTCC TGAGATTG CGTAACTCCTCA TTTG TC CTGAGATTT GAAAT G TAGAAGT GTCC   AGTTTGTCCACTA     TATTTTGGTC TTCCGTGAAAAAT     TTAAATAAG   TAAAGTGACAAAAAT CCCTCA   TTTG   AATCA     
     |||||||||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||||| ||||| | ||||||| ||||   |||||||||||||     |||||||||| |||||||||||||     |||||||||   ||||||||||||||| ||||||   ||||   |||||     G
     TTTACCGAAAAATCGGTTTTACCAGG ACTCTGAC GTATTGAGGAGT AAAT AG GACTCTAAA CTTTA C ATCTTCA CAGG   TCAAACAGGTGGT     GTAAAACCAG AAGGCACTTTTTA     AATTTATTC   GTTTTATTGTTTTTA GGGAGT   AAAT   TTGGT     
TAGGA                          T        G            G    C  A         A     G A       C    AAC             AGTTT          G             -AAAC         CTG               T      --C    -TA     TACTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End