Plant MITE

SE3020198

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_335
Malus domestica
SE3020198
Mutator
MadM11
MDC007928.208:17612-17778
TTGGCTCAA
GGCTCAAGGGTGGTGCTATCTACACACCCATTTTTACCTCTCACACACCCTTCTCAATTT

Secondary structure and sequence

TSD TIR

5'

3'

 TT   T     G         C      -        T                 -CTC     CCGG    CG    GAATGAA
   GGC CAAGG TGGTGCTAT TACACA CCCATTTT ACCTCTCACACACCCTT    AATTT    CCGT  GATC       
   ||| ||||| ||||||||| |||||| |||||||| |||||||||||||||||    |||||    ||||  ||||       T
   TCG GTTCC ATCACGATA GTGTGT GGGTAAAA TGGAGAGTGTGTGGGAA    TTAAA    GGTA  CTAG       
AAC   -     Y         A      A        -                 CAAT     AACA    -A    AAGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020198

TTGGCTCAAGGGTGGTGCTATCTACACACCCATTTTTACCTCTCACACACCCTTCTCAATTTCCGGCCGTCGGATCGAATGAATTGAAGAAGATCAATGGACAAAAATTTAACAAGGGTGTGTGAGAGGTAAAATGGGATGTGTGAATAGCACTAYCCTTGGCTCAA

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