Plant MITE

SE3020200

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_337
Malus domestica
SE3020200
Mutator
MadM41
MDC015487.87:2239-2454
TTATTTGTG
GGGATCAGGATCCTCTCTTGAGCAAATGGAGAGGATCTTTCTGATCAGG

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTGT     C                  A      A                 CACATCGAA   T               -  GCTACAAACATGAATCCTTC
        GGGAT AGGATCCTCTCTTGAGCA ATGGAG GGATCTTTCTGATCAGG         CCG TTAATTTTTATCTAA CG                    
        ||||| |||||||||||||||||| |||||| |||||||||||||||||         ||| ||||||||||||||| ||                    T
        TCCTA TCCTAGGAGAGGACTCGT TACCTC CCTAGGAGGACTGGTCC         GGC AGTTAAAAATAGGTT GC                    
GTGTTTAT     A                  C      C                 AGACAACCC   C               A  AATATTAATAATATTAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020200

TTATTTGTGGGATCAGGATCCTCTCTTGAGCAAATGGAGAGGATCTTTCTGATCAGGCACATCGAACCGTTTAATTTTTATCTAACGGCTACAAACATGAATCCTTCTAAAAATTATAATAATTATAACGATTGGATAAAAATTGACCGGCCCAACAGACCTGGTCAGGAGGATCCCCTCCATCTGCTCAGGAGAGGATCCTAATCCTTATTTGTG

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